MOLE-BLAST is a new tool to classify multiple query sequences and discover their relationship to each other.
This tool provides a taxonomic context for the queries. It is intended to work with a specific locus from a set of organisms rather than sequences like the entire genome of an organism or unannotated contigs. Example input would be 16S sequences from different bacteria or ITS sequences from fungi. Currently, MOLE-BLAST only accepts nucleotide queries.
Read more about MOLE-BLAST here. MOLE-BLAST is available here or from the BLAST homepage.