A new version of the stand-alone applications is available. Users are encouraged to use the BLAST+ applications available at ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/
This release includes a number of bug fixes for the BLAST+ applications:
1.) BLASTN runs with word-size four were missing hits in the 2.2.22 release, this has been fixed.
2.) Query/subject offsets for tabular formatting (query on minus strand) was fixed.
3.) A MEGABLAST performance regression (with query masking) was fixed.
4.) Seg filtering for long blastx queries was failing. This has been fixed and optimized.
5.) A bug that caused tabular output to contain tokens like "gnl|BL_ORD_ID|1 " was fixed.
6.) Search strategies can now be used in bl2seq mode.
7.) Problems with displaying accessions in XML output have been fixed.
8.) Problems with percent identity and percent positive matches in the the tabular output have been fixed.
BLAST+ applications, as well as the legacy C applications (e.g. blastall), may be downloaded from http://www.ncbi.nlm.nih.gov/blast/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download
This release includes a number of bug fixes for the BLAST+ applications:
1.) BLASTN runs with word-size four were missing hits in the 2.2.22 release, this has been fixed.
2.) Query/subject offsets for tabular formatting (query on minus strand) was fixed.
3.) A MEGABLAST performance regression (with query masking) was fixed.
4.) Seg filtering for long blastx queries was failing. This has been fixed and optimized.
5.) A bug that caused tabular output to contain tokens like "gnl|BL_ORD_ID|1 " was fixed.
6.) Search strategies can now be used in bl2seq mode.
7.) Problems with displaying accessions in XML output have been fixed.
8.) Problems with percent identity and percent positive matches in the the tabular output have been fixed.
BLAST+ applications, as well as the legacy C applications (e.g. blastall), may be downloaded from http://www.ncbi.nlm.nih.gov/blast/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download