A COBALT multiple sequence alignment can now be downloaded to a local file.
The following popular formats, used by alignment viewers as well as sequence and phylogeny analysis tools, are supported: FASTA plus gaps, ClustalW, Phylip, and Nexus. The alignment can also be downloaded as a Seq-align in ASN.1 format.
In order to download your alignment click the 'Download' link on the top of the results page and then select desired format in the 'Download alignment' box.
COBALT is a multiple alignment program for proteins that can be accessed from http://www.ncbi.nlm.nih.gov/tools/cobalt/cobalt.cgi or BLASTP search results at the NCBI.
The following popular formats, used by alignment viewers as well as sequence and phylogeny analysis tools, are supported: FASTA plus gaps, ClustalW, Phylip, and Nexus. The alignment can also be downloaded as a Seq-align in ASN.1 format.
In order to download your alignment click the 'Download' link on the top of the results page and then select desired format in the 'Download alignment' box.
COBALT is a multiple alignment program for proteins that can be accessed from http://www.ncbi.nlm.nih.gov/tools/cobalt/cobalt.cgi or BLASTP search results at the NCBI.
The COBALT algorithm is described in this paper.