New BLAST binaries are available on the NCBI FTP site.... The list of changes are:
1.) Ungapped blastn searches allow arbitrary reward/penalty scores.
2.) Spaces are allowed in database pathnames on windows
3.) Seedtop now has gilist support.
4.) Fix a bug that caused the number and order of queries to affect blastx results.
5.) Modified the 2-hit blastn algorithm so that no overlap is allowed between hits.
1.) Ungapped blastn searches allow arbitrary reward/penalty scores.
2.) Spaces are allowed in database pathnames on windows
3.) Seedtop now has gilist support.
4.) Fix a bug that caused the number and order of queries to affect blastx results.
5.) Modified the 2-hit blastn algorithm so that no overlap is allowed between hits.