A new version of the BLAST mapping tool is now available.
The new version handles multiple SRA accessions, offers improved splice site detection and multi-threading performance, and fixes issues with macOS installation. The release notes are available at ftp://ftp.ncbi.nlm.nih.gov/blast/executables/magicblast/LATEST/ChangeLog
The new executables are available on the NCBI FTP site at ftp://ftp.ncbi.nlm.nih.gov/blast/executables/magicblast/LATEST
Magic-BLAST is a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome. Read more here.